Book Reviews - Long Non-Coding RNAs

This volume assembles a broad spectrum of methods used in long non-coding RNAs (lncRNA) research, ranging from computational annotation of lncRNA genes to molecular and cellular analyses of the function of individual lncRNA. Long Non-Coding RNAs: Methods and Protocols also discusses methods used to study circular RNAs and RNA splicing, as well as influential findings on lncRNA in human diseases. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Thorough and cutting-edge, Long Non-Coding RNAs: Methods and Protocols is a must-have for molecular biologists, cell and developmental biologists, specialists who conduct disease-oriented research, and bioinformatics experts who seek a better understanding on lncRNA expression and function by computational analysis of the massive sequencing data that are rapidly accumulating in recent years.
1 LncRNA Pulldown Combined with Mass Spectrometry to Identify
the Novel LncRNA-Associated Proteins
Zhen Xing , Chunru Lin , and Liuqing Yang
2 Cross-Linking Immunoprecipitation and qPCR (CLIP-qPCR)
Analysis to Map Interactions Between Long Noncoding RNAs
and RNA-Binding Proteins
Je-Hyun Yoon and Myriam Gorospe 3 Characterization of Long Noncoding RNA-Associated Proteins
by RNA-Immunoprecipitation
Youyou Zhang , Yi Feng , Zhongyi Hu , Xiaowen Hu , Chao-Xing Yuan ,
Yi Fan , and Lin Zhang
4 Isolation of Protein Complexes Associated with Long Noncoding RNAs
Kiranmai Gumireddy , Jinchun Yan , and Qihong Huang
5 Profiling Long Noncoding RNA Expression Using Custom- Designed
Microarray
Xinna Zhang , Gabriel Lopez-Berestein , Anil K. Sood ,
and George A. Calin
6 Long Noncoding RNA Expression Profiling Using Arraystar
LncRNA Microarrays
Yanggu Shi and Jindong Shang
7 Nuclear RNA Isolation and Sequencing
Navroop K. Dhaliwal and Jennifer A. Mitchell
8 Targeted LncRNA Sequencing with the SeqCap RNA Enrichment System
John C. Tan , Venera D. Bouriakov , Liang Feng , Todd A. Richmond ,
and Daniel Burgess
9 ChIP-Seq: Library Preparation and Sequencing.
Karyn L. Sheaffer and Jonathan Schug
10 Stellaris® RNA Fluorescence In Situ Hybridization for the Simultaneous
Detection of Immature and Mature Long Noncoding RNAs
in Adherent Cells
Arturo V. Orjalo Jr. and Hans E. Johansson
11 Simultaneous RNA–DNA FISH
Lan-Tian Lai , Zhenyu Meng , Fangwei Shao , and Li-Feng Zhang
12 Visualizing Long Noncoding RNAs on Chromatin
Michael Hinten , Emily Maclary , Srimonta Gayen , Clair Harris , and Sundeep Kalantry
13 Non-Isotopic Method for In Situ LncRNA Visualization and Quantitation
Botoul Maqsodi and Corina Nikoloff
14 Detection of Long Noncoding RNA Expression by Nonradioactive
Northern Blots
Xiaowen Hu , Yi Feng , Zhongyi Hu , Youyou Zhang , Chao-Xing Yuan ,
Xiaowei Xu , and Lin Zhang
15 Assessment of In Vivo SiRNA Delivery in Cancer Mouse Models
Hiroto Hatakeyama , Sherry Y. Wu , Lingegowda S. Mangala ,
Gabriel Lopez-Berestein , and Anil K. Sood
16 Targeting Long Noncoding RNA with Antisense Oligonucleotide
Technology as Cancer Therapeutics
Tianyuan Zhou , Youngsoo Kim , and A. Robert MacLeod
17 Characterization of Circular RNAs
Yang Zhang , Li Yang , and Ling-Ling Chen
18 Methods for Characterization of Alternative RNA Splicing
Samuel E. Harvey and Chonghui Cheng
19 NONCODEv4: Annotation of Noncoding RNAs with Emphasis
on Long Noncoding RNAs
Yi Zhao , Jiao Yuan , and Runsheng Chen
20 Computational Analysis of LncRNA from cDNA Sequences
Susan Boerner and Karen M. McGinnis
21 Analyzing MiRNA–LncRNA Interactions
Maria D. Paraskevopoulou and Artemis G. Hatzigeorgiou
22 Long Noncoding RNAs: An Overview
Dongmei Zhang , Minmin Xiong , Congjian Xu , Peng Xiang ,
and Xiaomin Zhong

Book Reviews - Long Non-Coding RNAs